PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006038.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 265aa    MW: 29210.1 Da    PI: 4.8915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006038.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.4e-2968126259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ +Hnh+
  Aco006038.1  68 SDPWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTTLVVTYSFDHNHP 126
                  699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081131.61762128IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-3063128IPR003657WRKY domain
SuperFamilySSF1182902.35E-2564128IPR003657WRKY domain
SMARTSM007748.8E-3467127IPR003657WRKY domain
PfamPF031063.5E-2569126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDGYYYSSDS PDDAAVPSPP GEPKPTSHPP PPPTKRSRRS VQKRVVSVPI AEADPSRGKG  60
AGESGPPSDP WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRV DPTTLVVTYS  120
FDHNHPWPAP KNPHRPSSKR PARAGEEREP EAGRAGPDEP EEEEEEEVGA RGRFGDLMIG  180
AEFEWRAEEE DEAAVLLYGP MYGAALLPEE RGDSGRRAEE EDALFAGLGE LPECAVVFRH  240
RRGFGPEPEP EPEPEPEPWR SMNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-17691291978Probable WRKY transcription factor 4
2ayd_A5e-17681281574WRKY transcription factor 1
2lex_A4e-17691291978Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916734.11e-69PREDICTED: probable WRKY transcription factor 65
SwissprotQ9LP568e-59WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLB2ZAS56e-67B2ZAS5_9R
STRINGPOPTR_0011s06990.12e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.27e-40WRKY DNA-binding protein 69